Enspara: MSMs at Scale

Enspara is primarily a python library, but it also contains a few applications for very common Markov-state model related tasks.

• MSM estimation and manipulation
• Turn-key applications for clustering and analysis
• Transition path theory
• Information theory
• Ragged ndarrays

Contents:

• Installation
• Tutorial
• CARDS
• CLI
• Clustering
• Exposons
• Cookbook
• Pocket Detection
• Transition Path Theory
• API

Indices and tables

• Index
• Module Index
• Search Page