Enspara: MSMs at Scale

Enspara is primarily a python library, but it also contains a few applications for very common Markov-state model related tasks.

• MSM estimation and manipulation

• Turn-key applications for clustering and analysis

• Transition path theory

• Information theory

• Ragged ndarrays

Contents:

• Installation
• Tutorial
• CARDS
• CLI
• Clustering
• Exposons
• Cookbook
• Pocket Detection
• Transition Path Theory
• smFRET predictions
• Developing
• API

Indices and tables

• Index

• Module Index

• Search Page